PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00032082-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family Trihelix
Protein Properties Length: 572aa    MW: 65050.8 Da    PI: 8.446
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00032082-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix44.34.8e-1497160269
            trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegek 69 
                         W ++evlaL+++r+ me+++ +       We+vs+k+ ++ gf+rsp +Ckek+e+ ++++    + +k
  WALNUT_00032082-RA  97 WANEEVLALLRIRSGMENWFPEF-----TWEHVSRKLaEDVGFKRSPSKCKEKFEEESRYFNDNINYNK 160
                         ********************998.....9********7779*******************987665555 PP

2trihelix94.97.4e-30454547186
            trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 
                         rW+++evlaLi++r ++++  +++          ++ plWe++s+ m e g++rs+k+Ckekwen+nk++kk+k+ +kkr s +s+tcpyf
  WALNUT_00032082-RA 454 RWPRDEVLALINLRCSTDQYNNSNGgdqdkegiaKAPPLWERISQGMLELGYKRSAKRCKEKWENINKYFKKTKDANKKR-SLDSRTCPYF 543
                         8*************9988877764334455666699*******************************************8.9999****** PP

            trihelix  83 dqle 86 
                         +ql 
  WALNUT_00032082-RA 544 HQLS 547
                         **95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.5E-896159No hitNo description
PROSITE profilePS500906.02896149IPR017877Myb-like domain
CDDcd122032.66E-23453527No hitNo description
PfamPF138375.3E-19453547No hitNo description
PROSITE profilePS500906.365454520IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MEQYQITSST SWIASRTTLP SLSPSFPVLH AFSSPNIFPS YDHYDPSLSL PPNLLHPLHQ  60
QSPTHKDHQE QKQENNLVSM NLDTERQRSL PDPIESWANE EVLALLRIRS GMENWFPEFT  120
WEHVSRKLAE DVGFKRSPSK CKEKFEEESR YFNDNINYNK SYRFLSELEE LYQGHDHQNP  180
RVGAGKNQRI LEKPSGGEDN LGQSNLEVDS RDGTVGNKRF QDSHHENVQG KSKRKKRKRR  240
KKFEMLEGLC EKVVIKIMAQ QEEMHNKLLE DMVKRDEEKV AKEEAWKKQA MDRMNKELEI  300
MANEQAIAGV RHATIIEYLK QLTSSSSGSH CVEERAALLV HESLKVTTSS NSYPSSSSCS  360
LIQAPNPNHS SLISTQVINS ITPTSITKTL SHQNTSPALS PNTPDIPTSS SLPTASRNPN  420
SINTQKNPLT PISTWTQKVS QDSITNVKDN LGKRWPRDEV LALINLRCST DQYNNSNGGD  480
QDKEGIAKAP PLWERISQGM LELGYKRSAK RCKEKWENIN KYFKKTKDAN KKRSLDSRTC  540
PYFHQLSTLY MSQGTSQDVA APSEGPENIL TT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1230241KSKRKKRKRRKK
2233238RKKRKR
3233241RKKRKRRKK
4234239KKRKRR
5234241KKRKRRKK
6235240KRKRRK
7235241KRKRRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011005709.11e-177PREDICTED: trihelix transcription factor GTL2-like
TrEMBLB9I5E11e-174B9I5E1_POPTR; Uncharacterized protein
STRINGPOPTR_0013s03670.11e-172(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50433355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.14e-84Trihelix family protein